/*
 * Copyright 2010-2012 Susanta Tewari. <freecode4susant@users.sourceforge.net>
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

/*
* ComGLHoodIOptions.java
*
* Created on December 7, 2007, 10:12 PM
 */
package gui.genomemap.view.inputView.options;

import gui.genomemap.inputModel.ComPLHoodIModel;

/**
 *
 * @author  stewari1
 */
public class ComPLHoodIOptions extends javax.swing.JDialog {


    // Variables declaration - do not modify//GEN-BEGIN:variables

    /** Field description */
    private javax.swing.ButtonGroup applyImputation_JButtonGroup;

    /** Field description */
    private javax.swing.JPanel general_JPanel;

    /** Field description */
    private javax.swing.ButtonGroup imputationOptions_ButtonGroup;

    /** Field description */
    private javax.swing.JPanel jPanel1;

    /** Field description */
    private javax.swing.JPanel jPanel2;


    // End of variables declaration//GEN-END:variables

    /** Creates new form ComGLHoodIOptions */
    public ComPLHoodIOptions(java.awt.Frame parent, boolean modal) {

        super(parent, modal);

        initComponents();
    }

    /**
     * This method is called from within the constructor to
     * initialize the form.
     * WARNING: Do NOT modify this code. The content of this method is
     * always regenerated by the Form Editor.
     */


    // <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
    private void initComponents() {

        applyImputation_JButtonGroup  = new javax.swing.ButtonGroup();
        imputationOptions_ButtonGroup = new javax.swing.ButtonGroup();
        general_JPanel                = new javax.swing.JPanel();
        jPanel1                       = new javax.swing.JPanel();
        jPanel2                       = new javax.swing.JPanel();

        setDefaultCloseOperation(javax.swing.WindowConstants.DISPOSE_ON_CLOSE);
        setTitle("Advanced Input Settings");
        setAlwaysOnTop(true);
        setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
        setModal(true);
        jPanel1.setBorder(javax.swing.BorderFactory.createTitledBorder("PLHood Settings"));

        javax.swing.GroupLayout jPanel1Layout = new javax.swing.GroupLayout(jPanel1);

        jPanel1.setLayout(jPanel1Layout);
        jPanel1Layout.setHorizontalGroup(
            jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addGap(
                0, 288, Short.MAX_VALUE));
        jPanel1Layout.setVerticalGroup(
            jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addGap(
                0, 129, Short.MAX_VALUE));
        jPanel2.setBorder(javax.swing.BorderFactory.createTitledBorder("Optional Operations"));

        javax.swing.GroupLayout jPanel2Layout = new javax.swing.GroupLayout(jPanel2);

        jPanel2.setLayout(jPanel2Layout);
        jPanel2Layout.setHorizontalGroup(
            jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addGap(
                0, 288, Short.MAX_VALUE));
        jPanel2Layout.setVerticalGroup(
            jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addGap(
                0, 94, Short.MAX_VALUE));

        javax.swing.GroupLayout general_JPanelLayout = new javax.swing.GroupLayout(general_JPanel);

        general_JPanel.setLayout(general_JPanelLayout);
        general_JPanelLayout.setHorizontalGroup(
            general_JPanelLayout.createParallelGroup(
                javax.swing.GroupLayout.Alignment.LEADING).addGroup(
                javax.swing.GroupLayout.Alignment.TRAILING,
                general_JPanelLayout.createSequentialGroup().addContainerGap().addGroup(
                    general_JPanelLayout.createParallelGroup(
                        javax.swing.GroupLayout.Alignment.TRAILING).addComponent(
                        jPanel2, javax.swing.GroupLayout.Alignment.LEADING,
                        javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE,
                        Short.MAX_VALUE).addComponent(
                            jPanel1, javax.swing.GroupLayout.Alignment.LEADING,
                            javax.swing.GroupLayout.DEFAULT_SIZE,
                            javax.swing.GroupLayout.DEFAULT_SIZE,
                            Short.MAX_VALUE)).addContainerGap()));
        general_JPanelLayout.setVerticalGroup(
            general_JPanelLayout.createParallelGroup(
                javax.swing.GroupLayout.Alignment.LEADING).addGroup(
                general_JPanelLayout.createSequentialGroup().addContainerGap().addComponent(
                    jPanel1, javax.swing.GroupLayout.PREFERRED_SIZE,
                    javax.swing.GroupLayout.DEFAULT_SIZE,
                    javax.swing.GroupLayout.PREFERRED_SIZE).addGap(18, 18, 18).addComponent(
                        jPanel2, javax.swing.GroupLayout.DEFAULT_SIZE,
                        javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE).addContainerGap()));

        javax.swing.GroupLayout layout = new javax.swing.GroupLayout(getContentPane());

        getContentPane().setLayout(layout);
        layout.setHorizontalGroup(
            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addComponent(
                general_JPanel, javax.swing.GroupLayout.Alignment.TRAILING,
                javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE,
                Short.MAX_VALUE));
        layout.setVerticalGroup(
            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addComponent(
                general_JPanel, javax.swing.GroupLayout.DEFAULT_SIZE,
                javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE));
        pack();

    }    // </editor-fold>//GEN-END:initComponents

    public void setOptions(ComPLHoodIModel inputModel) {


        // lHood settings : may be false positive/negative values
        // optional operations: future options
    }

    public void getOptions(ComPLHoodIModel inputModel) {


        // lHood settings : may be false positive/negative values
        // optional operations
    }
}
